diff --git a/values.template.yaml b/values.template.yaml
index 8f6147811254f45e67eb3be0540848759b6ddeff..a9aae1f8dba592ae064a06fd6a0c988ce68079c2 100644
--- a/values.template.yaml
+++ b/values.template.yaml
@@ -1,22 +1,37 @@
-# https://ucsd-prp.gitlab.io/userdocs/development/jupyterhub/
+# This file can update the JupyterHub Helm chart's default configuration values.
+#
+# For reference see the configuration reference and default values, but make
+# sure to refer to the Helm chart version of interest to you!
+#
+# Introduction to YAML: https://www.youtube.com/watch?v=cdLNKUoMc6c
+# Chart config reference: https://zero-to-jupyterhub.readthedocs.io/en/stable/resources/reference.html
+# Chart default values: https://github.com/jupyterhub/zero-to-jupyterhub-k8s/blob/HEAD/jupyterhub/values.yaml
+# Available chart versions: https://jupyterhub.github.io/helm-chart/
+#
+
hub:
config:
CILogonOAuthenticator:
- client_id: cilogon:/client_id/76c3f7eb194ad6ef6c22a92ce1b54d89
- client_secret: t_zrDuJRlJX4LZhUCrk3iPMwG9MKKuveHZMzqINyET3RfidDEvAnkNRHhYC1NiRtShsThwF0cy4vzLNorNw4-Q
- oauth_callback_url: https://csusb-hub-project.nrp-nautilus.io/hub/oauth_callback
+ client_id: $CILOGON_ID
+ client_secret: $CILOGON_SECRET
+ oauth_callback_url: https://csusb-hpc.nrp-nautilus.io/hub/oauth_callback
username_claim: "email"
- allowed_idps: ["csusb.edu"]
JupyterHub:
admin_access: true
- admin_users: ["dvu@csusb.edu", "000065181@csusb.edu", "youngsu.kim@csusb.edu", "006501270@csusb.edu"]
authenticator_class: cilogon
- #Restricts access to csusb domains
- #allowed_idps command may change its funtionality after update
- #https://github.com/jupyterhub/oauthenticator/issues/494
+ admin_users: ["dvu@csusb.edu", "000065181@csusb.edu", "youngsu.kim@csusb.edu", "006501270@csusb.edu"]
+ allowed_users:
+ - 000065181@csusb.edu
+ - 004793408@csusb.edu
+ - 006501322@csusb.edu
+ - 003574622@csusb.edu
+ - 005795019@csusb.edu
+ - 005061741@csusb.edu
+ - 003087200@csusb.edu
+ - 000030081@csusb.edu
+ - dmishin@ucsd.edu
allowed_idps: ["csusb.edu"]
-# initContainers for custom htmls
initContainers:
- name: git-clone-templates
image: alpine/git
@@ -42,28 +57,11 @@ hub:
extraConfig:
templates: |
c.JupyterHub.template_paths = ['/etc/jupyterhub/custom']
-
-# https://github.com/jupyterhub/zero-to-jupyterhub-k8s/issues/1990
- extraFiles:
- image_select_idp:
- mountPath: /usr/local/share/jupyterhub/static/select_idp_cilogon.png
-
- # Files in /usr/local/etc/jupyterhub/jupyterhub_config.d are
- # automatically loaded in alphabetical order of the final file
- # name when JupyterHub starts.
-
- # for dynamic resource allocation
- custom_spawner:
- mountPath: /usr/local/etc/jupyterhub/jupyterhub_config.d/my_spawner.py
- # Custom profiles list for the spawner above
- custom_spawner_profile:
- mountPath: /etc/jupyterhub/custom/my_spawner.html
-
service:
type: ClusterIP
annotations: {}
ports:
- nodePort:
+ nodePort:
loadBalancerIP:
deploymentStrategy:
type: Recreate
@@ -72,29 +70,29 @@ hub:
pvc:
accessModes:
- ReadWriteOnce
- storage: 2Gi
+ storage: 5Gi
storageClassName: rook-ceph-block
resources:
limits:
cpu: "2"
- memory: 1Gi
+ memory: 4Gi
requests:
- cpu: 100m
- memory: 512Mi
+ cpu: "2"
+ memory: 4Gi
networkPolicy:
enabled: false
proxy:
- secretToken: "795cb91892686a06560e9532d2b073b4cdbe102e92ea2b25496e3ae76f240c09"
+ secretToken: '$SECRET_TOKEN'
service:
type: ClusterIP
chp:
resources:
limits:
cpu: "2"
- memory: 1Gi
+ memory: 4Gi
requests:
- cpu: 200m
- memory: 512Mi
+ cpu: "2"
+ memory: 4Gi
singleuser:
extraNodeAffinity:
required:
@@ -102,15 +100,6 @@ singleuser:
- 'key': 'topology.kubernetes.io/region'
'operator': 'In'
'values': ["us-west"]
- # - 'key': 'nvidia.com/cuda.runtime.major'
- # 'operator': 'In'
- # 'values': ["11"]
- # - 'key': 'nvidia.com/cuda.runtime.minor'
- # 'operator': 'In'
- # 'values': ["4"]
- # - 'key': 'kubernetes.io/hostname'
- # 'operator': 'In'
- # 'values': ['fiona8-0.calit2.uci.edu','fiona8-1.calit2.uci.edu','fiona8-2.calit2.uci.edu','fiona8-3.calit2.uci.edu']
cloudMetadata:
blockWithIptables: false
networkPolicy:
@@ -118,53 +107,94 @@ singleuser:
storage:
type: dynamic
extraLabels: {}
- # extraVolumes: []
- # extraVolumeMounts: []
- capacity: 5Gi
+ extraVolumes: []
+ extraVolumeMounts: []
+ capacity: 100Gi
homeMountPath: /home/jovyan
dynamic:
storageClass: rook-ceph-block
pvcNameTemplate: claim-{username}{servername}
volumeNameTemplate: volume-{username}{servername}
storageAccessModes: [ReadWriteOnce]
- # extraVolumes:
- # - name: csusb-hub-project-share
- # persistentVolumeClaim:
- # claimName: csusb-hub-project-share
- # extraVolumeMounts:
- # - name: csusb-hub-project-share
- # mountPath: /home/jovyan/shared
+ extraVolumes:
+ - name: csusb-hpc-share
+ persistentVolumeClaim:
+ claimName: csusb-hpc-share
+ - name: mkshare-script
+ configMap:
+ name: mkshare-script
+ defaultMode: 0777
+ extraVolumeMounts:
+ - name: csusb-hpc-share
+ mountPath: /home/shared
+ - name: mkshare-script
+ mountPath: /usr/local/bin/before-notebook.d/mkshare.sh
+ subPath: mkshare.sh
image:
name: localhost:30081/prp/jupyter-stack/prp
tag: latest
startTimeout: 600
cpu:
- limit: 1
- guarantee: 1
+ limit: 16
+ guarantee: 16
memory:
- limit: 2G
- guarantee: 2G
+ limit: 128G
+ guarantee: 128G
extraResource:
limits: {}
guarantees: {}
- cmd: jupyterhub-singleuser
+ cmd: start-notebook.sh
+# cmd: jupyterhub-singleuser
defaultUrl: "/lab"
-
- # This list is overriden by extraFile
profileList:
- display_name: Stack Minimal
+ default: true
kubespawner_override:
image_spec: localhost:30081/prp/jupyter-stack/minimal
- # extra_resource_limits:
- # nvidia.com/gpu: {}
- # default: True
- - display_name: Stack Minimal no GPU
- kubespawner_override:
- image_spec: localhost:30081/prp/jupyter-stack/minimal
- # extra_resource_limits:
- # nvidia.com/gpu: "1"
- # default: True
-
+# - display_name: Stack Minimal + Desktop GUI + Relion
+# kubespawner_override:
+# image_spec: localhost:30081/prp/jupyter-stack/relion-desktop
+# - display_name: Stack All Spark
+# kubespawner_override:
+# image_spec: localhost:30081/prp/jupyter-stack/all-spark
+# extra_resource_limits:
+# nvidia.com/gpu: "2"
+# - display_name: Stack Datascience
+# kubespawner_override:
+# image_spec: localhost:30081/prp/jupyter-stack/datascience
+# extra_resource_limits:
+# nvidia.com/gpu: "2"
+# - display_name: Stack Tensorflow [2GPUs]
+# kubespawner_override:
+# image_spec: localhost:30081/prp/jupyter-stack/prp
+# extra_resource_limits:
+# nvidia.com/gpu: "2"
+# - display_name: Stack Tensorflow [4GPUs]
+# kubespawner_override:
+# image_spec: localhost:30081/prp/jupyter-stack/prp
+# extra_resource_limits:
+# nvidia.com/gpu: "4"
+# - display_name: Stack R-Studio [4.1.2]
+# kubespawner_override:
+# image_spec: gitlab-registry.nrp-nautilus.io/youngsu_kim/csusb-jupyter-stack/stack-rstudio:sr-r1
+# - display_name: Stack R-Studio
+# kubespawner_override:
+# image_spec: localhost:30081/prp/jupyter-stack/r-studio
+# # extra_resource_limits:
+# # nvidia.com/gpu: "1"
+# - display_name: Stack Pyspark [2GPUs]
+# kubespawner_override:
+# image_spec: localhost:30081/prp/jupyter-stack/pyspark
+# extra_resource_limits:
+# nvidia.com/gpu: "2"
+# - display_name: Stack Pyspark [4GPUs]
+# kubespawner_override:
+# image_spec: localhost:30081/prp/jupyter-stack/pyspark
+# extra_resource_limits:
+# nvidia.com/gpu: "4"
+# - display_name: Stack SageMath
+# kubespawner_override:
+# image_spec: gitlab-registry.nrp-nautilus.io/youngsu_kim/csusb-jupyter-stack/stack-sagemath:b353d66b
scheduling:
userScheduler:
enabled: false
@@ -179,14 +209,14 @@ ingress:
enabled: true
annotations:
kubernetes.io/ingress.class: haproxy
- hosts: ["csusb-hub-project.nrp-nautilus.io"]
+ hosts: ["csusb-hpc.nrp-nautilus.io"]
pathSuffix: ''
tls:
- hosts:
- - csusb-hub-project.nrp-nautilus.io
+ - csusb-hpc.nrp-nautilus.io
cull:
- enabled: true
+ enabled: false
users: false
removeNamedServers: false
timeout: 3600