From 927479f052630b31e2ec475f792adf393d4abdf0 Mon Sep 17 00:00:00 2001
From: Margarete Walden <maw32@humboldt.edu>
Date: Tue, 27 Aug 2024 20:17:18 -0700
Subject: [PATCH] Update install_packages.R: added line to compile from source;
added "caret" package.
---
base_image/install_packages.R | 7 ++++++-
1 file changed, 6 insertions(+), 1 deletion(-)
diff --git a/base_image/install_packages.R b/base_image/install_packages.R
index f8a8286..21e0f9e 100644
--- a/base_image/install_packages.R
+++ b/base_image/install_packages.R
@@ -1,4 +1,9 @@
+## Set option to remove interaction requirement when installing packages
+## that need compilation
+
+options(install.packages.compile.from.source="always")
+
####----Primary libraries
install.packages(c("FDboost","gamboostLSS","stringr","rpart","ranger",
"nimble","doParallel","foreach","pdp",
- "betareg","iml","MCMCvis"))
+ "betareg","iml","MCMCvis", "caret"))
--
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